Package picard.arrays.illumina
Class Build37ExtendedIlluminaManifestRecordCreator
- java.lang.Object
-
- picard.arrays.illumina.Build37ExtendedIlluminaManifestRecordCreator
-
public class Build37ExtendedIlluminaManifestRecordCreator extends Object
-
-
Field Summary
Fields Modifier and Type Field Description static String
ACGT_CODES
static String
BUILD_37
static int
FIVE_PRIME_SEQUENCE
static int
INDEL_SEQUENCE
static String
IUPAC_NUCLEOTIDE_CODES
static int
PRE_INDEL_SEQUENCE
static int
THREE_PRIME_SEQUENCE
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description Build37ExtendedIlluminaManifestRecord
createRecord(IlluminaManifestRecord illuminaManifestRecord)
Set<String>
getUnsupportedBuilds()
boolean
isRefStrandDefinedInManifest()
-
-
-
Field Detail
-
BUILD_37
public static final String BUILD_37
- See Also:
- Constant Field Values
-
IUPAC_NUCLEOTIDE_CODES
public static final String IUPAC_NUCLEOTIDE_CODES
- See Also:
- Constant Field Values
-
ACGT_CODES
public static final String ACGT_CODES
- See Also:
- Constant Field Values
-
FIVE_PRIME_SEQUENCE
public static final int FIVE_PRIME_SEQUENCE
- See Also:
- Constant Field Values
-
PRE_INDEL_SEQUENCE
public static final int PRE_INDEL_SEQUENCE
- See Also:
- Constant Field Values
-
INDEL_SEQUENCE
public static final int INDEL_SEQUENCE
- See Also:
- Constant Field Values
-
THREE_PRIME_SEQUENCE
public static final int THREE_PRIME_SEQUENCE
- See Also:
- Constant Field Values
-
-
Method Detail
-
createRecord
public Build37ExtendedIlluminaManifestRecord createRecord(IlluminaManifestRecord illuminaManifestRecord)
-
isRefStrandDefinedInManifest
public boolean isRefStrandDefinedInManifest()
-
-