Class CollectRawWgsMetrics.RawWgsMetrics

  • Enclosing class:
    CollectRawWgsMetrics

    @DocumentedFeature(groupName="Metrics",
                       summary="Metrics")
    public static class CollectRawWgsMetrics.RawWgsMetrics
    extends WgsMetrics
    • Constructor Detail

      • RawWgsMetrics

        public RawWgsMetrics()
      • RawWgsMetrics

        public RawWgsMetrics​(htsjdk.samtools.util.IntervalList intervals,
                             htsjdk.samtools.util.Histogram<Integer> highQualityDepthHistogram,
                             htsjdk.samtools.util.Histogram<Integer> unfilteredDepthHistogram,
                             double pctExcludedByAdapter,
                             double pctExcludedByMapq,
                             double pctExcludedByDupes,
                             double pctExcludedByPairing,
                             double pctExcludedByBaseq,
                             double pctExcludedByOverlap,
                             double pctExcludedByCapping,
                             double pctTotal,
                             int coverageCap,
                             htsjdk.samtools.util.Histogram<Integer> unfilteredBaseQHistogram,
                             int sampleSize)